Module 1: Fallow Simulation

IMPORTANT NOTE: It is highly recommended that you upgrade your APSIM Next Gen version to at least version 2023.2.7164.0 or later.

We will create a simulation that examines the water balance over time in a fallow field in two locations with different soil types.

  1. In the top menu bar, click on "Open an example".

    Open example menu bar option

    Because all simulations generally share the same base components, we do not recommend starting from scratch. The best method is to choose the simulation closest to the one you want to build then modify it. For the purpose of this exercise we will use the Continuous Wheat simulation. Click ‘Wheat.apsimx’ then click Open.

  2. Select "Wheat.apsimx".

    Open wheat.apsim

  3. Click Save as.

    Save as

  4. Create a new folder called ‘Apsim Training’ to save all of your work in.

    • Remember this location, as you will save all training modules to this location. Save the file as "Module1". You will now see the new simulation loaded.



    Create new folder

    Simulation loaded

  5. The Apsim UI consists of four panels; the main toolbar at the top, a simulation tree on the left that lists all the components in the loaded file, a module properties pane on the right and a bar at the bottom that displays messages.

Building a simulation

  1. First we will make sure we’re using the right weather data. Click the "Weather" component in the simulation tree. You should be able to see weather data for Dalby loaded. Click browse and select "AU_Goondiwindi.met" to change it to Goondiwindi weather.

    Weather view

    Weather view file select

  2. Next we’ll set the start and end dates for the simulation. In the clock component, set the start date to 1/1/1989 and the end date to 31/12/1989.

    Changing clock settings

  3. We are going to utilise a pre made toolbox to make it easier to access some soil data. In APSIM Next Gen, you can access this by:

    • Clicking 'Home'
    • Then clicking "Training toolbox" from the menu bar.

    Getting to the training toolbox

    • Inside the training toolbox double-click "Soils".

    • Right-click the "Heavy Clay", click copy.

      Getting to the training toolbox

    • Next Click "Module 1". This is located above the menu bar. This will take you back to your Module 1 simulation view.

    • Next, right-click "Field" and click "paste" from the menu that appears.

      Adding heavy clay to field

  4. Delete the old soil by clicking it and pressing delete. You can reorder components by right clicking and choosing Move Up/Down (Keyboard shortcut: Hold ctrl + up or down keys).

    Reordering plus removing old soil

  5. We need to set the starting water and nitrogen conditions for the soil. Expand the new soil node "Heavy Clay" and click "Water". Make sure "Filled from top" is checked and set "Percent full" to 10%.

    Setting starting water settings

  6. Click the "NO3" component and set the starting NO3 to 50 kg/ha and starting NH4 to 3 kg/ha. We’ll spread it evenly through the entire soil profile. First, we need to tell Apsim that we want to work in units of kg/ha, not ppm.

    • To change the units, right-click the "initial values" cell and select "kg/ha"
    • Change NO3 and NH4 to kg/ha then enter the values below.

      Setting starting NO3

      Setting starting NH4

  1. We want the nitrogen spread evenly through the entire soil profile. To find out how deep the profile is, click the Water node under Soil. The table should show layers ranging from 0-150 to 1500-1800mm. As the depths are not set correctly we will modify NO3 and NH4's depth values to 0-1800.

Checking depths

  1. In the SurfaceOrganicMatter node, check that the ‘Type of initial residue pool’ is wheat and change the ‘Mass of initial surface residue (kg/ha)’ to 1000 kg/ha.

    • To do this click in the cell to the right of "Mass of initial surface residue (kg/ha)".
    • Then change the value from 500 to 1000.

    This means we start the simulation with 1000kg/ha of wheat stubble on the surface. This will decay over time putting nutrients back in the soil. It will also reduce surface evaporation.

  2. Delete the Fertiliser, Wheat, and three Manager nodes: Sow using a variable rule, Fertilise at sowing and Harvest, as we do not need them for a fallow simulation.

    • To do this right click each manager node
    • Then click delete.
    • These nodes have this icon:

    It should now look like this:

New simulation structure

  1. Rename the simulation. To do this:

    • Right-click the Simulation node under Simulations.
    • Click ‘rename’.
    • Type in ‘Clay Fallow’ and press enter.

    New simulation structure

  2. Results for the simulation are found in the ‘DataStore’ node. The data that is reported into the datastore is configured in the "Report" node, found under the "Field" node. Click the "Report" node and delete all the Variables under the "Reporting variables" section. To do this:

    • Highlight all the text.
    • Right-click the highlighted text and click "delete".

    Deleting reporting variables

  3. Next we will enter the variables we want reported. These are:

    [Clock].Today
[Weather].Rain
sum([Soil].SoilWater.ESW)
[Soil].SoilWater.Es
[Soil].SoilWater.Runoff
[Soil].SoilWater.Drainage
sum([Soil].NO3.kgha)
sum([Soil].Nutrient.MineralisedN
[SurfaceOrganicMatter].Wt
[SurfaceOrganicMatter].Cover

    Where Reporting frequency displays the variable :

    [Wheat].Harvesting

    Replace with the variable by typing:

    [Clock].EndOfDay

    Your report view should now look like this:

    Reporting variables

    You can choose a regular interval such as every day or once a month/year, etc, or you specify an event.

    For instance you might want to output on sowing, harvesting or fertilising. You can have multiple events in a report but this will result in duplicated writes if a day meets both criteria.

    For this simulation we want to output daily so we've used:

    [Clock].EndOfDay.
    1. We've finished building the simulation.
      • Click run button in the menu bar. The bottom panel will display a message like Simulation complete [.09 sec].
      • Once the run is complete, click the ‘DataStore’ component to view the results.
      • This information can be exported as a spreadsheet by:
        • right-clicking "DataStore" node DataStore
        • click "Export to EXCEL"
          • This will be saved as "Module1.xlsx" in the same folder you saved your "Module1.apsimx" file.
        • or "export output to text files".
          • This will be saved as "Module1.Report.csv" in the same folder you saved your "Module1.apsimx" file.

Creating a graph

Apsim has the ability to do basic visualisation and analysis right in the user interface. Let’s use the inbuilt APSIM graphs to display the output file in a graph.

We will create a graph of Date vs ESW and Rain(Right Hand Axis).

  1. First lets delete the existing graph called: "Wheat Yield Time Series" by right-clicking the node and clicking "delete". Delete graph

  2. Next lets create a new graph for this simulation.

    • Right-click "Clay Fallow"
    • Click "add model" add model
    • Double-click "graph" this will add it to the list of nodes. add graph

  3. To add data to our graphs we will add "series" to our graph. To do this:

    • Right-click "graph"
    • Click "Add model..."
    • Double-click "Series" add series

  4. Click "Series". Rename it to ESW.Now we will change the specifics for this series.

    • In the Data Source drop down menu, select Report.
    • In the X drop down menu, select Clock.Today.
    • In the Y drop down menu, select sum(Soil.SoilWater.ESW).
    • In the Type drop down menu, select Scatter.
    • In the Line Type drop down menu, select Solid.
    • In the Marker type drop down menu, select None.
    • In the Colour drop down menu, select orange.
    • Your ESW series variables should now look like this: ESW series variables

  5. Let's add another series to the "Graph" node. Rename it "Rain".

    • In the Data Source drop down menu, select Report.
    • In the X drop down menu, select Clock.Today.
    • In the Y drop down menu, select Weather.Rain.
      • Also, tick the "on right?" checkbox. This will add it to the right side of the graph.
    • In the Type drop down menu, select Scatter.
    • In the Line Type drop down menu, select Solid.
    • In the Marker type drop down menu, select None.
    • In the Colour drop down menu, select blue.
    • Your Rain series variables should now look like this: Rain graph variables

  6. If we click on the "Graph" node now it will display all the data like so Graphed data

  7. Try to create a graph of Date vs Runoff and Rain (right hand axis). - Change the line type to "Dot". - Tip: you can copy a graph by dragging it to the node where you want it to appear. - Try copying your graph to the "Simulation" node and then edit the new one. - It should look like this: Runoff graph

Comparing Simulations

Quite often you will want to examine differences between multiple simulations. Let’s examine the effect of runoff on the water balance of two different soil types. To do this, we’ll copy our simulation to create a new one exactly the same.

  1. Drag the "Clay Fallow" node up to the top simulations node. Now drop it on the node to create a copy. Copy Clay Fallow node

  2. Rename this new simulation "Sand Fallow". Rename Simulation

  3. In Report for the Sand Fallow Simulation, remove the report variable named [Weather].Rain. This avoids making the rain line return to the start of the graph.

  4. Drag the Sand soil from the Training toolbox onto the "Field" node under the new Sand Fallow simulation. Then delete the Heavy Clay soil. Copy sand soil type

  5. Since we have a new soil we need to set initial water and nitrogen again.

    • Click "Water" node and change variable "percent full" to 10% and check "filled from top?" Change water variables
    • Click "NO3" node and change "0-2000" Depth value to: "0-1300".
    • Change "ppm" to "kg/ha" by right-clicking "ppm" and clicking "kg/ha".
    • Change the "initial value" to 50 and press enter.
    • Next, click "NH4" node and change the "ppm" value to "kg/ha" like we did above with "NO3" node.
    • Change Depth to "0-1300" and "initial value" to "3".
    • Your nodes variables should look like below:
	<td>
	<p>NO3</p>
	![NO3](/images/ModuleOneImages/step34.png)
	</td>

	<td>
	<p>NH4</p>
	![NH4](/images/ModuleOneImages/step35.png)
	</td>

</tr>

Graph both Simulations

  1. Next, run APSIM.
  2. Let's graph both the simulations together. To do this:
    • Right-click "Simulations" node at the very top of the left panel.
    • Click "Add model..."
    • Double-click "Graph" Whole simulation graph
  3. Let's rename it "Runoff".
  4. Let's add a series to this graph by right-clicking the "Graph", clicking "Add model...", and double-clicking "Series".
  5. Rename the series "runoff" and change the variables to match the image below. runoff series variables
  6. Add another "series" to the "Runoff" graph and rename it "rain".
  7. Change the variables to match the image below> rain series variables
  8. Now we have a graph showing the runoff of both soils. Final graph

Congratulations on completing your first module!

Note: If you found any incorrect/outdated information in this tutorial, please let us know on GitHub by submitting an issue.

Created 22/02/2023 - Last updated 05/03/2023